3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
UGCGAAG*CGAUGUAUA
Length
16 nucleotides
Bulged bases
5O61|1|A|G|2018, 5O61|1|A|U|2033, 5O61|1|A|U|2037
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5O61_079 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.2231
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

5O61|1|A|U|2015
5O61|1|A|G|2016
5O61|1|A|C|2017
5O61|1|A|G|2018
5O61|1|A|A|2019
5O61|1|A|A|2020
5O61|1|A|G|2021
*
5O61|1|A|C|2030
5O61|1|A|G|2031
5O61|1|A|A|2032
5O61|1|A|U|2033
5O61|1|A|G|2034
5O61|1|A|U|2035
5O61|1|A|A|2036
5O61|1|A|U|2037
5O61|1|A|A|2038

Current chains

Chain A
23S rRNA

Nearby chains

Chain BA
Small subunit ribosomal RNA; SSU rRNA
Chain C
50S ribosomal protein L2

Coloring options:


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