IL_5O61_112

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

5O61|1|A|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_112 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1861

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5O61|1|A|U|2860
5O61|1|A|U|2861
5O61|1|A|G|2862
5O61|1|A|A|2863
5O61|1|A|G|2864
*
5O61|1|A|C|2998
5O61|1|A|A|2999
5O61|1|A|A|3000
5O61|1|A|G|3001
5O61|1|A|A|3002
5O61|1|A|C|3003
5O61|1|A|C|3004
5O61|1|A|A|3005
5O61|1|A|G|3006

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13