IL_5O61_114

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

5O61|1|A|C|2950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_114 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1233

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5O61|1|A|C|2904
5O61|1|A|C|2905
5O61|1|A|U|2906
5O61|1|A|C|2907
5O61|1|A|U|2908
*
5O61|1|A|A|2949
5O61|1|A|C|2950
5O61|1|A|G|2951

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19