IL_5O61_160

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGUAG*CGCAGAUA

Length

13 nucleotides

Bulged bases

5O61|1|BA|A|682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_160 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.3197

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5O61|1|BA|U|664
5O61|1|BA|G|665
5O61|1|BA|U|666
5O61|1|BA|A|667
5O61|1|BA|G|668
*
5O61|1|BA|C|679
5O61|1|BA|G|680
5O61|1|BA|C|681
5O61|1|BA|A|682
5O61|1|BA|G|683
5O61|1|BA|A|684
5O61|1|BA|U|685
5O61|1|BA|A|686

Current chains

Chain BA

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BK

30S ribosomal protein S11