IL_5O61_189
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O61_189 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.2037
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5O61|1|BA|C|1413
5O61|1|BA|C|1414
5O61|1|BA|G|1415
5O61|1|BA|A|1416
5O61|1|BA|A|1417
5O61|1|BA|G|1418
*
5O61|1|BA|C|1450
5O61|1|BA|G|1451
5O61|1|BA|A|1452
5O61|1|BA|A|1453
5O61|1|BA|G|1454
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- 30S ribosomal protein S20
- Chain Q
- 50S ribosomal protein L19
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