IL_5O61_197

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_197 not in the Motif Atlas

Geometric match to IL_8P9A_327

Geometric discrepancy: 0.1782

The information below is about IL_8P9A_327

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5O61|1|BA|U|1407
5O61|1|BA|A|1408
5O61|1|BA|A|1409
5O61|1|BA|C|1410
*
5O61|1|BA|G|1457
5O61|1|BA|G|1458
5O61|1|BA|G|1459
5O61|1|BA|A|1460

Current chains

Chain BA

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain L

50S ribosomal protein L14