IL_5OOM_018
3D structure
- PDB id
- 5OOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GUAG*CACC
- Length
- 8 nucleotides
- Bulged bases
- 5OOM|1|A|A|2172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OOM_018 not in the Motif Atlas
- Homologous match to IL_6PRV_001
- Geometric discrepancy: 0.4424
- The information below is about IL_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28482.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5OOM|1|A|G|2170
5OOM|1|A|U|2171
5OOM|1|A|A|2172
5OOM|1|A|G|2173
*
5OOM|1|A|C|2187
5OOM|1|A|A|2188
5OOM|1|A|C|2189
5OOM|1|A|C|2190
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 39S ribosomal protein L11, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain l
- 39S ribosomal protein L54, mitochondrial
Coloring options: