IL_5OT7_079

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

5OT7|1|4|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_079 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.2785

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5OT7|1|4|G|702
5OT7|1|4|U|703
5OT7|1|4|G|704
5OT7|1|4|A|705
5OT7|1|4|A|706
5OT7|1|4|G|707
*
5OT7|1|4|U|724
5OT7|1|4|G|725
5OT7|1|4|G|726
5OT7|1|4|A|727
5OT7|1|4|G|728
5OT7|1|4|G|729
5OT7|1|4|C|730

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L2