IL_5OT7_175
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_175 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1611
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5OT7|1|5|C|71
5OT7|1|5|G|72
5OT7|1|5|A|73
5OT7|1|5|U|74
5OT7|1|5|G|75
5OT7|1|5|G|76
5OT7|1|5|U|77
5OT7|1|5|A|78
5OT7|1|5|C|79
*
5OT7|1|5|G|98
5OT7|1|5|G|99
5OT7|1|5|A|100
5OT7|1|5|G|101
5OT7|1|5|A|102
5OT7|1|5|G|103
5OT7|1|5|U|104
5OT7|1|5|A|105
5OT7|1|5|G|106
Current chains
- Chain 5
- 5S Ribosomal RNA
Nearby chains
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain 6
- 50S ribosomal protein L25
- Chain r
- 50S ribosomal protein L16
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