IL_5T2A_008

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAU*AA

Length

6 nucleotides

Bulged bases

5T2A|1|2|A|112, 5T2A|1|2|A|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_008 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1564

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5T2A|1|2|U|111
5T2A|1|2|A|112
5T2A|1|2|A|113
5T2A|1|2|U|114
*
5T2A|1|2|A|344
5T2A|1|2|A|345

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 5

eS8

Chain AE

uS17