IL_5T2A_015
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUCAG*CGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 5T2A|1|2|U|357, 5T2A|1|2|U|395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_015 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1366
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5T2A|1|2|U|355
5T2A|1|2|A|356
5T2A|1|2|U|357
5T2A|1|2|C|358
5T2A|1|2|A|359
5T2A|1|2|G|360
*
5T2A|1|2|C|392
5T2A|1|2|G|393
5T2A|1|2|U|394
5T2A|1|2|U|395
5T2A|1|2|G|396
5T2A|1|2|A|397
5T2A|1|2|C|398
5T2A|1|2|G|399
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- eS8
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AE
- uS17
- Chain AS
- uS12
Coloring options: