IL_5T2A_026

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5T2A|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_026 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.116

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5T2A|1|2|G|611
5T2A|1|2|U|612
5T2A|1|2|G|613
5T2A|1|2|C|614
5T2A|1|2|C|615
5T2A|1|2|A|616
5T2A|1|2|G|617
*
5T2A|1|2|C|624
5T2A|1|2|G|625
5T2A|1|2|G|626
5T2A|1|2|U|627
5T2A|1|2|A|628
5T2A|1|2|A|629
5T2A|1|2|U|630
5T2A|1|2|U|631
5T2A|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

uS12

Chain AX

uS3

Chain AY

eS30