IL_5T2A_028
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_028 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1252
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5T2A|1|2|C|676
5T2A|1|2|G|677
5T2A|1|2|U|678
5T2A|1|2|A|679
5T2A|1|2|G|680
*
5T2A|1|2|U|1215
5T2A|1|2|C|1216
5T2A|1|2|A|1217
5T2A|1|2|A|1218
5T2A|1|2|G|1219
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AE
- uS17
- Chain AG
- uS15
- Chain AJ
- uS8
- Chain AS
- uS12
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