IL_5T2A_038

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUUC*GGAU

Length

9 nucleotides

Bulged bases

5T2A|1|2|U|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_038 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.1405

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5T2A|1|2|A|1117
5T2A|1|2|G|1118
5T2A|1|2|U|1119
5T2A|1|2|U|1120
5T2A|1|2|C|1121
*
5T2A|1|2|G|1200
5T2A|1|2|G|1201
5T2A|1|2|A|1202
5T2A|1|2|U|1203

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 0

eS1

Chain AG

uS15

Chain AW

eS27