IL_5T2A_039
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|2|G|1123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_039 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1498
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5T2A|1|2|C|1121
5T2A|1|2|G|1122
5T2A|1|2|G|1123
5T2A|1|2|G|1124
5T2A|1|2|G|1125
*
5T2A|1|2|C|1197
5T2A|1|2|A|1198
5T2A|1|2|A|1199
5T2A|1|2|G|1200
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 0
- eS1
- Chain AG
- uS15
- Chain AV
- eS26
- Chain e
- eL30
Coloring options: