IL_5T2A_050

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

5T2A|1|2|C|1512, 5T2A|1|2|C|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_050 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3579

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5T2A|1|2|C|1510
5T2A|1|2|A|1511
5T2A|1|2|C|1512
5T2A|1|2|C|1513
5T2A|1|2|A|1514
*
5T2A|1|2|U|2033
5T2A|1|2|C|2034
5T2A|1|2|C|2035
5T2A|1|2|C|2036
5T2A|1|2|U|2037
5T2A|1|2|G|2038

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AK

uS9

Chain AN

uS7

Chain AZ

eS28