IL_5T2A_070
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCAGUGAG*CGAAGAG
- Length
- 16 nucleotides
- Bulged bases
- 5T2A|1|A|G|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_070 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1259
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|A|C|80
5T2A|1|A|U|81
5T2A|1|A|C|82
5T2A|1|A|A|83
5T2A|1|A|G|84
5T2A|1|A|U|85
5T2A|1|A|G|86
5T2A|1|A|A|87
5T2A|1|A|G|88
*
5T2A|1|A|C|96
5T2A|1|A|G|97
5T2A|1|A|A|98
5T2A|1|A|A|99
5T2A|1|A|G|100
5T2A|1|A|A|101
5T2A|1|A|G|102
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- eL18
- Chain L
- eL13
- Chain O
- eL15
- Chain Z
- uL15
- Chain r
- eL42
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