IL_5T2A_086
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCGG*UUGCGU
- Length
- 11 nucleotides
- Bulged bases
- 5T2A|1|A|C|831
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_086 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.338
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
5T2A|1|A|A|812
5T2A|1|A|C|813
5T2A|1|A|C|814
5T2A|1|A|G|815
5T2A|1|A|G|816
*
5T2A|1|A|U|828
5T2A|1|A|U|829
5T2A|1|A|G|830
5T2A|1|A|C|831
5T2A|1|A|G|832
5T2A|1|A|U|833
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- eL18
- Chain Z
- uL15
- Chain b
- eL29
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