IL_5T2A_088
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5T2A|1|A|A|984, 5T2A|1|A|G|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_088 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0984
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|A|G|856
5T2A|1|A|A|857
5T2A|1|A|A|858
5T2A|1|A|A|859
5T2A|1|A|G|860
*
5T2A|1|A|C|982
5T2A|1|A|U|983
5T2A|1|A|A|984
5T2A|1|A|G|985
5T2A|1|A|U|986
5T2A|1|A|A|987
5T2A|1|A|G|988
5T2A|1|A|C|989
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- eL13
- Chain O
- eL15
- Chain Z
- uL15
- Chain l
- eL37
- Chain p
- uL4
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