IL_5T2A_110
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGUG*CCAUU
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|A|U|1401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_110 not in the Motif Atlas
- Homologous match to IL_5TBW_048
- Geometric discrepancy: 0.1881
- The information below is about IL_5TBW_048
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
5T2A|1|A|A|1224
5T2A|1|A|U|1225
5T2A|1|A|G|1226
5T2A|1|A|U|1227
5T2A|1|A|G|1228
*
5T2A|1|A|C|1398
5T2A|1|A|C|1399
5T2A|1|A|A|1400
5T2A|1|A|U|1401
5T2A|1|A|U|1402
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain I
- eL18
- Chain g
- eL32
- Chain j
- eL33
- Chain u
- uL30
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