IL_5T2A_111
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUCAAAA*UUAGUGGUUG
- Length
- 18 nucleotides
- Bulged bases
- 5T2A|1|A|G|1390, 5T2A|1|A|U|1395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_111 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1636
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|A|C|1230
5T2A|1|A|G|1231
5T2A|1|A|U|1232
5T2A|1|A|C|1233
5T2A|1|A|A|1234
5T2A|1|A|A|1235
5T2A|1|A|A|1236
5T2A|1|A|A|1237
*
5T2A|1|A|U|1387
5T2A|1|A|U|1388
5T2A|1|A|A|1389
5T2A|1|A|G|1390
5T2A|1|A|U|1391
5T2A|1|A|G|1392
5T2A|1|A|G|1393
5T2A|1|A|U|1394
5T2A|1|A|U|1395
5T2A|1|A|G|1396
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- uL13
- Chain N
- eL14
- Chain Q
- eL20
- Chain j
- eL33
- Chain u
- uL30
Coloring options: