IL_5T2A_114
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCAUUCUCG*CUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5T2A|1|A|U|1250, 5T2A|1|A|U|1251, 5T2A|1|A|C|1252, 5T2A|1|A|U|1253, 5T2A|1|A|U|1378, 5T2A|1|A|A|1380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_114 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1551
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|A|C|1246
5T2A|1|A|U|1247
5T2A|1|A|C|1248
5T2A|1|A|A|1249
5T2A|1|A|U|1250
5T2A|1|A|U|1251
5T2A|1|A|C|1252
5T2A|1|A|U|1253
5T2A|1|A|C|1254
5T2A|1|A|G|1255
*
5T2A|1|A|C|1376
5T2A|1|A|U|1377
5T2A|1|A|U|1378
5T2A|1|A|A|1379
5T2A|1|A|A|1380
5T2A|1|A|G|1381
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- srRNA3
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- uL13
- Chain N
- eL14
- Chain Q
- eL20
- Chain q
- eL40
- Chain w
- uL6
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