IL_5T2A_118
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GUGUAGC
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|A|U|1445, 5T2A|1|A|A|1446, 5T2A|1|A|G|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_118 not in the Motif Atlas
- Geometric match to IL_4V88_392
- Geometric discrepancy: 0.2751
- The information below is about IL_4V88_392
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
5T2A|1|A|G|1418
5T2A|1|A|C|1419
*
5T2A|1|A|G|1442
5T2A|1|A|U|1443
5T2A|1|A|G|1444
5T2A|1|A|U|1445
5T2A|1|A|A|1446
5T2A|1|A|G|1447
5T2A|1|A|C|1448
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain I
- eL18
- Chain a
- eL28
- Chain g
- eL32
- Chain p
- uL4
- Chain u
- uL30
Coloring options: