IL_5T2A_119

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCU*AGUG

Length

7 nucleotides

Bulged bases

5T2A|1|A|G|1521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_119 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.1139

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

5T2A|1|A|C|1468
5T2A|1|A|C|1469
5T2A|1|A|U|1470
*
5T2A|1|A|A|1520
5T2A|1|A|G|1521
5T2A|1|A|U|1522
5T2A|1|A|G|1523

Current chains

Chain A

LSU-alpha

Nearby chains

Chain Z

uL15

Chain a

eL28

Chain g

eL32

Chain p

uL4