IL_5T2A_124

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_124 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0717

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5T2A|1|A|G|1536
5T2A|1|A|G|1537
5T2A|1|A|C|1538
5T2A|1|A|G|1539
5T2A|1|A|U|1540
5T2A|1|A|A|1541
5T2A|1|A|G|1542
*
5T2A|1|B|C|537
5T2A|1|B|G|538
5T2A|1|B|A|539
5T2A|1|B|A|540
5T2A|1|B|A|541
5T2A|1|B|C|542

Current chains

Chain A

LSU-alpha

Chain B

LSU-beta

Nearby chains

Chain P

uL22

Chain p

uL4