IL_5T2A_126
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAG*CAACAG
- Length
- 11 nucleotides
- Bulged bases
- 5T2A|1|A|C|1740, 5T2A|1|A|A|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_126 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.1399
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
5T2A|1|A|C|1640
5T2A|1|A|U|1641
5T2A|1|A|G|1642
5T2A|1|A|A|1643
5T2A|1|A|G|1644
*
5T2A|1|A|C|1737
5T2A|1|A|A|1738
5T2A|1|A|A|1739
5T2A|1|A|C|1740
5T2A|1|A|A|1741
5T2A|1|A|G|1742
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- srRNA1
- Chain c
- uL2
- Chain h
- eL34
- Chain l
- eL37
- Chain o
- eL39
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