IL_5T2A_156
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAG*CGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_156 not in the Motif Atlas
- Homologous match to IL_5TBW_099
- Geometric discrepancy: 0.1249
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|B|C|1029
5T2A|1|B|A|1030
5T2A|1|B|G|1031
*
5T2A|1|B|C|1049
5T2A|1|B|G|1050
5T2A|1|B|U|1051
5T2A|1|B|A|1052
5T2A|1|B|G|1053
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain K
- uL5
- Chain S
- eL21
- Chain s
- uL18
Coloring options: