IL_5T2A_191
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAGUAC*GGAACUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_191 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1346
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5T2A|1|G|G|46
5T2A|1|G|G|47
5T2A|1|G|U|48
5T2A|1|G|A|49
5T2A|1|G|G|50
5T2A|1|G|U|51
5T2A|1|G|A|52
5T2A|1|G|C|53
*
5T2A|1|G|G|58
5T2A|1|G|G|59
5T2A|1|G|A|60
5T2A|1|G|A|61
5T2A|1|G|C|62
5T2A|1|G|U|63
5T2A|1|G|C|64
Current chains
- Chain G
- srRNA2
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain U
- uL14
- Chain d
- uL3
- Chain q
- eL40
- Chain w
- uL6
Coloring options: