IL_5T2A_194
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUCUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 5T2A|1|G|U|84, 5T2A|1|G|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_194 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.172
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5T2A|1|G|U|82
5T2A|1|G|U|83
5T2A|1|G|U|84
5T2A|1|G|C|85
5T2A|1|G|U|86
5T2A|1|G|G|87
*
5T2A|1|G|C|112
5T2A|1|G|G|113
5T2A|1|G|A|114
5T2A|1|G|A|115
5T2A|1|G|G|116
Current chains
- Chain G
- srRNA2
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- srRNA4
- Chain W
- eL24
- Chain d
- uL3
- Chain f
- eL31
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