IL_5T2A_230

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGA*UCUGG

Length

9 nucleotides

Bulged bases

5T2A|1|2|C|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_230 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2206

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5T2A|1|2|C|1564
5T2A|1|2|A|1565
5T2A|1|2|G|1566
5T2A|1|2|A|1567
*
5T2A|1|2|U|1853
5T2A|1|2|C|1854
5T2A|1|2|U|1855
5T2A|1|2|G|1856
5T2A|1|2|G|1857

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 8

uS14

Chain AD

eS10

Chain AI

uS19