IL_5T2C_074

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_074 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1492

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5T2C|1|A|G|2358
5T2C|1|A|U|2359
5T2C|1|A|A|2360
5T2C|1|A|G|2361
5T2C|1|A|U|2362
5T2C|1|A|A|2363
5T2C|1|A|G|2364
*
5T2C|1|A|C|3858
5T2C|1|A|G|3859
5T2C|1|A|A|3860
5T2C|1|A|A|3861
5T2C|1|A|A|3862
5T2C|1|A|C|3863

Current chains

Chain A

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain J

60S ribosomal protein L17