IL_5T2C_128

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

5T2C|1|A|U|4634, 5T2C|1|A|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_128 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.3322

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5T2C|1|A|U|4632
5T2C|1|A|G|4633
5T2C|1|A|U|4634
5T2C|1|A|A|4635
5T2C|1|A|U|4636
5T2C|1|A|G|4637
*
5T2C|1|A|C|4662
5T2C|1|A|G|4663
5T2C|1|A|A|4664
5T2C|1|A|A|4665
5T2C|1|A|G|4666

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain Q

60S ribosomal protein L24

Chain X

60S ribosomal protein L31