IL_5T2C_140

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

5T2C|1|A|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_140 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.2513

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5T2C|1|A|G|5000
5T2C|1|A|U|5001
5T2C|1|A|U|5002
*
5T2C|1|A|G|5045
5T2C|1|A|U|5046
5T2C|1|A|C|5047
5T2C|1|A|A|5048
5T2C|1|A|G|5049
5T2C|1|A|C|5050

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain X

60S ribosomal protein L31