IL_5T2C_156
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 5T2C|1|AA|U|361, 5T2C|1|AA|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_156 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.2425
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5T2C|1|AA|U|359
5T2C|1|AA|A|360
5T2C|1|AA|U|361
5T2C|1|AA|C|362
5T2C|1|AA|A|363
5T2C|1|AA|A|364
*
5T2C|1|AA|U|396
5T2C|1|AA|G|397
5T2C|1|AA|A|398
5T2C|1|AA|C|399
5T2C|1|AA|C|400
5T2C|1|AA|A|401
5T2C|1|AA|C|402
5T2C|1|AA|G|403
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 40S ribosomal protein S23
- Chain Au
- 40S ribosomal protein S8
- Chain Aw
- 40S ribosomal protein S11
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