IL_5T2C_161

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

5T2C|1|AA|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_161 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2256

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5T2C|1|AA|C|491
5T2C|1|AA|C|492
5T2C|1|AA|A|493
5T2C|1|AA|C|494
5T2C|1|AA|U|495
5T2C|1|AA|C|496
*
5T2C|1|AA|G|506
5T2C|1|AA|G|507
5T2C|1|AA|A|508
5T2C|1|AA|G|509

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein S9

Chain AQ

40S ribosomal protein S24

Chain Ar

40S ribosomal protein S4, X isoform