IL_5T2C_168

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_168 not in the Motif Atlas

Homologous match to IL_8P9A_413

Geometric discrepancy: 0.36

The information below is about IL_8P9A_413

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5T2C|1|AA|U|805
5T2C|1|AA|U|806
5T2C|1|AA|G|807
*
5T2C|1|AA|C|856
5T2C|1|AA|U|857
5T2C|1|AA|A|858

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein S15a

Chain Ar

40S ribosomal protein S4, X isoform

Chain Aw

40S ribosomal protein S11