IL_5T2C_190
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 5T2C|1|AA|C|1553, 5T2C|1|AA|C|1554, 5T2C|1|AA|U|1555, 5T2C|1|AA|A|1556, 5T2C|1|AA|A|1580, 5T2C|1|AA|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_190 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.3996
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2C|1|AA|G|1550
5T2C|1|AA|U|1551
5T2C|1|AA|G|1552
5T2C|1|AA|C|1553
5T2C|1|AA|C|1554
5T2C|1|AA|U|1555
5T2C|1|AA|A|1556
5T2C|1|AA|C|1557
5T2C|1|AA|C|1558
*
5T2C|1|AA|G|1577
5T2C|1|AA|U|1578
5T2C|1|AA|A|1579
5T2C|1|AA|A|1580
5T2C|1|AA|C|1581
5T2C|1|AA|C|1582
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S20
- Chain AG
- 40S ribosomal protein S29
- Chain AU
- 40S ribosomal protein S19
- Chain Aq
- 40S ribosomal protein S3
- Chain Av
- 40S ribosomal protein S10
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