IL_5T2C_202
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_202 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1854
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5T2C|1|B|G|71
5T2C|1|B|U|72
5T2C|1|B|U|73
5T2C|1|B|A|74
5T2C|1|B|G|75
5T2C|1|B|U|76
5T2C|1|B|A|77
5T2C|1|B|C|78
*
5T2C|1|B|G|98
5T2C|1|B|G|99
5T2C|1|B|A|100
5T2C|1|B|A|101
5T2C|1|B|U|102
5T2C|1|B|A|103
5T2C|1|B|C|104
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L18a
- Chain N
- 60S ribosomal protein L21
- Chain m
- 60S ribosomal protein L7
- Chain p
- 60S ribosomal protein L10-like
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