IL_5T2C_233

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGCG*CCCC

Length

9 nucleotides

Bulged bases

5T2C|1|A|C|4900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_233 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.271

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5T2C|1|A|G|4897
5T2C|1|A|G|4898
5T2C|1|A|G|4899
5T2C|1|A|C|4900
5T2C|1|A|G|4901
*
5T2C|1|A|C|4920
5T2C|1|A|C|4921
5T2C|1|A|C|4922
5T2C|1|A|C|4923

Current chains

Chain A

28S rRNA

Nearby chains

Chain s

60S ribosomal protein L14