IL_5T2C_248

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAA*UUUG

Length

9 nucleotides

Bulged bases

5T2C|1|AA|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_248 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2496

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5T2C|1|AA|C|1205
5T2C|1|AA|G|1206
5T2C|1|AA|G|1207
5T2C|1|AA|A|1208
5T2C|1|AA|A|1209
*
5T2C|1|AA|U|1690
5T2C|1|AA|U|1691
5T2C|1|AA|U|1692
5T2C|1|AA|G|1693

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S26

Chain AJ

40S ribosomal protein S2