IL_5TCU_018

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5TCU|1|A|A|540, 5TCU|1|A|U|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_018 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2605

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5TCU|1|A|G|523
5TCU|1|A|U|524
5TCU|1|A|G|525
5TCU|1|A|C|526
5TCU|1|A|C|527
5TCU|1|A|A|528
5TCU|1|A|G|529
*
5TCU|1|A|C|536
5TCU|1|A|G|537
5TCU|1|A|G|538
5TCU|1|A|U|539
5TCU|1|A|A|540
5TCU|1|A|A|541
5TCU|1|A|U|542
5TCU|1|A|A|543
5TCU|1|A|C|544

Current chains

Chain A

16S RRNA

Nearby chains

Chain S3

30S ribosomal protein S12

Chain SB

30S ribosomal protein S3

Chain X

mRNA