IL_5TCU_063
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGGAUG*CUGAAACC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_063 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.4534
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5TCU|1|B|G|24
5TCU|1|B|U|25
5TCU|1|B|G|26
5TCU|1|B|G|27
5TCU|1|B|A|28
5TCU|1|B|U|29
5TCU|1|B|G|30
*
5TCU|1|B|C|555
5TCU|1|B|U|556
5TCU|1|B|G|557
5TCU|1|B|A|558
5TCU|1|B|A|559
5TCU|1|B|A|560
5TCU|1|B|C|561
5TCU|1|B|C|562
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain L3
- 50S ribosomal protein L20
- Chain L5
- 50S ribosomal protein L22
- Chain LE
- 50S ribosomal protein L32
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