IL_5TCU_098

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

5TCU|1|B|C|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_098 not in the Motif Atlas

Geometric match to IL_7A0S_034

Geometric discrepancy: 0.234

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5TCU|1|B|U|1048
5TCU|1|B|C|1049
5TCU|1|B|C|1050
5TCU|1|B|C|1051
5TCU|1|B|A|1052
5TCU|1|B|A|1053
5TCU|1|B|A|1054
5TCU|1|B|A|1055
*
5TCU|1|B|U|1194
5TCU|1|B|A|1195

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain LM

50S ribosomal protein L13