IL_5TCU_106

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5TCU|1|B|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_106 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1871

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5TCU|1|B|C|1246
5TCU|1|B|G|1247
5TCU|1|B|U|1248
5TCU|1|B|U|1249
5TCU|1|B|G|1250
5TCU|1|B|A|1251
5TCU|1|B|A|1252
5TCU|1|B|G|1253
*
5TCU|1|B|U|1272
5TCU|1|B|G|1273
5TCU|1|B|G|1274
5TCU|1|B|A|1275
5TCU|1|B|G|1276

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20