IL_5TCU_217

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCU*AGUAAA

Length

10 nucleotides

Bulged bases

5TCU|1|B|A|1926, 5TCU|1|B|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_217 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3395

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5TCU|1|B|U|1868
5TCU|1|B|G|1869
5TCU|1|B|C|1870
5TCU|1|B|U|1871
*
5TCU|1|B|A|1923
5TCU|1|B|G|1924
5TCU|1|B|U|1925
5TCU|1|B|A|1926
5TCU|1|B|A|1927
5TCU|1|B|A|1928

Current chains

Chain B

23S RRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L2

50S ribosomal protein L2