IL_5TZS_015
3D structure
- PDB id
- 5TZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Architecture of the yeast small subunit processome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 5TZS|1|1|U|313, 5TZS|1|1|C|351
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TZS_015 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.0548
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5TZS|1|1|U|311
5TZS|1|1|A|312
5TZS|1|1|U|313
5TZS|1|1|C|314
5TZS|1|1|A|315
5TZS|1|1|A|316
*
5TZS|1|1|U|348
5TZS|1|1|U|349
5TZS|1|1|U|350
5TZS|1|1|C|351
5TZS|1|1|A|352
5TZS|1|1|A|353
5TZS|1|1|C|354
5TZS|1|1|G|355
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain 8
- rpS8_eS8
- Chain D
- rpS11_uS17
Coloring options: