IL_5TZS_020

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

5TZS|1|1|G|459

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_020 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.0004

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5TZS|1|1|C|443
5TZS|1|1|C|444
5TZS|1|1|A|445
5TZS|1|1|A|446
5TZS|1|1|U|447
5TZS|1|1|C|448
*
5TZS|1|1|G|458
5TZS|1|1|G|459
5TZS|1|1|A|460
5TZS|1|1|G|461

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 5

rpS4_ES4

Chain F

rpS24_eS24