3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
5UQ8|1|a|A|532, 5UQ8|1|a|U|534, 5UQ8|1|a|A|535
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_136 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2255
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5UQ8|1|a|G|515
5UQ8|1|a|PSU|516
5UQ8|1|a|G|517
5UQ8|1|a|C|518
5UQ8|1|a|C|519
5UQ8|1|a|A|520
5UQ8|1|a|G|521
*
5UQ8|1|a|C|528
5UQ8|1|a|G|529
5UQ8|1|a|G|530
5UQ8|1|a|U|531
5UQ8|1|a|A|532
5UQ8|1|a|A|533
5UQ8|1|a|U|534
5UQ8|1|a|A|535
5UQ8|1|a|C|536

Current chains

Chain a
16S rRNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12
Chain x
DnaX ribosomal frameshifting element

Coloring options:


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