IL_5UYN_068

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5UYN|1|01|A|1801, 5UYN|1|01|C|1816, 5UYN|1|01|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYN_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0988

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5UYN|1|01|U|1798
5UYN|1|01|G|1799
5UYN|1|01|C|1800
5UYN|1|01|A|1801
5UYN|1|01|A|1802
5UYN|1|01|A|1803
5UYN|1|01|C|1804
*
5UYN|1|01|G|1813
5UYN|1|01|G|1814
5UYN|1|01|A|1815
5UYN|1|01|C|1816
5UYN|1|01|G|1817
5UYN|1|01|U|1818
5UYN|1|01|A|1819
5UYN|1|01|U|1820
5UYN|1|01|A|1821

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain A

Small subunit ribosomal RNA; SSU rRNA