IL_5UYN_100
3D structure
- PDB id
- 5UYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCACUG*UAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYN_100 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3419
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5UYN|1|01|U|2680
5UYN|1|01|C|2681
5UYN|1|01|A|2682
5UYN|1|01|C|2683
5UYN|1|01|U|2684
5UYN|1|01|G|2685
*
5UYN|1|01|U|2724
5UYN|1|01|A|2725
5UYN|1|01|A|2726
5UYN|1|01|A|2727
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 13
- 50S ribosomal protein L14
- Chain 16
- 50S ribosomal protein L17
- Chain 18
- 50S ribosomal protein L19
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